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Wildlife-Movement-Analysis-CLI
Config-driven CLI pipeline for GPS telemetry movement analysis. Computes home ranges (MCP, KDE), adaptive spatial clustering (DBSCAN/HDBSCAN), behavioural states (GMM), seasonal dynamics, and environmental interactions. Outputs publication-ready figures, tables, and GIS layers.
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What's in it
- Data offered docs-verified
- home range: 100% MCP and 95% trimmed MCP per individual and per season · home range: fixed-bandwidth KDE utilisation distribution · spatial clusters: DBSCAN (knn eps) or HDBSCAN · behavioural states: GMM on log-speed and turning angle (transit, rest, tortuous) · seasonal wet/dry home range comparison with Wilcoxon test · distance to water by behavioural state and season (requires water_path) · per-individual metric summary table and population figures
- Coverage llm-inferred
- Global (location-agnostic; depends on the user's GPS input and chosen metric CRS)
- Resolution docs-verified
- Temporal: set by resample_interval_minutes (e.g. 60; 0 disables). Distances computed in a user-chosen metric_crs (e.g. EPSG:32734).
- Formats docs-verified
- CSV (input fixes, output tables) · YAML (config) · GeoJSON (cluster layers; optional water input) · PNG (figures) · JSON (run_metadata.json)
- Access llm-inferred
- Free, open source under MIT licence; runs locally (Python 3.10+, pip install -r requirements.txt); no authentication described
Useful for
- Use cases llm-inferred
- EIA/planning ecological baseline: seasonal home range (MCP/KDE) and range contraction for a species affected by a scheme · Water-proximity assessment: distance to water by behavioural state (fig7) to inform mitigation near abstractions or drainage features · GIS hotspot layers: clusters.geojson for habitat mapping in QGIS or ArcGIS
- Audience llm-inferred
- ecologists · environmental consultants · GIS analysts · planners
Limitations
- Constraints llm-inferred
- Docs describe a command-line pipeline (python run.py config.yaml); no MCP server interface, transport or callable tool names are documented · The ENTRY tools list contains output filenames, not callable MCP tools · Tested only on African lions, mountain caribou and African elephants · Requires Python 3.10+ and a local install; HDBSCAN is an optional extra · KDE can be slow on large datasets; reduce kde_max_pts or kde_grid_size · Water-based outputs (fig7, fig10) require a water_path input · Input columns must match config mappings exactly (case-sensitive) · Degenerate clustering (all noise, single cluster, >85% noise) needs config tuning
- Licence
- MIT
- Authentication
- Unknown — review source docs
- GitHub stars
- 4
- Last commit
- 12/04/2026
- Last successful page check
- 14/10/2026
- Page health
- healthy
- Package
- Not recorded
- Verification
- Not independently verified
Auto-extracted, unverified fields: tools, install, auth. Check upstream documentation.
Provenance & evidence
Tools/install/auth auto-extracted from README; quality score heuristic (stars, recency, tool count, licence).
Metadata observed 15/10/2026 · research sweep: github-search